Serious Epidemic Viral Pneumonias



Serious Epidemic Viral Pneumonias


Daniel H. Libraty



There are a number of established, emerging, and reemerging viruses that can lead to severe respiratory illness in immunocompetent individuals. The etiologic agents of serious viral pneumonias can generally be divided into three groups:



  • Human-adapted respiratory viruses. The primary site of entry, replication, and disease for these viruses is the human respiratory tract. They are spread efficiently by person-to-person transmission. The most significant members of this group are the human influenza A and B viruses; others are respiratory syncytial virus (RSV) and adenovirus.


  • Human-adapted viruses—respiratory disease after a viremic phase. Viral entry and person-to-person spread of these viruses is via the respiratory tract. However, these viruses cause respiratory illness after a phase of systemic viral replication and dissemination. Members of this group include varicella zoster virus (chickenpox) and rubeola virus (measles).


  • Zoonotic viruses. Viruses in this group include the severe acute respiratory syndrome (SARS) coronavirus, New World hantaviruses producing the hantavirus cardiopulmonary syndrome (HCPS), and the H5N1 avian influenza A virus.


Pathogenesis

A virus must first gain access to the lower respiratory tract in order to produce severe pneumonia. The most common mode of entry is via droplet transmission. Airborne virus-containing droplets 5 to 10 μm in diameter are filtered and deposited in the upper respiratory tract. Virus reaches the lower respiratory tract after efficient replication and spread within squamous epithelial cells, often in the setting of impaired mucociliary clearance (due to extremes of age, antecedent or concurrent infections, and drugs). This is the usual mode of entry for many human-adapted respiratory viruses, such as influenza, RSV, adenovirus, and coronavirus. Person-to-person spread via droplets is limited to a distance of approximately 1 m. Other viruses such as varicella and rubeola are transmitted via aerosols (particles 1 to 5 μm in diameter) that can deposit directly in the lower respiratory tract. As such, they are highly infectious and can be transmitted over greater distances and time than agents transmitted by droplets. Although deposited directly in alveoli, viral dissemination in the lung typically occurs hematogenously after a viremic phase [1,2].

Once in the lower respiratory tract, there are a limited number of ways that the lung can respond to a viral infection and produce respiratory illness. Viral invasion and replication can directly produce a necrotizing bronchopneumonia with highly inflammatory, purulent, and exudative reactions. This is not common, but can be seen with influenza and adenovirus infections. Respiratory viral infections can impair host lung defenses in a way that leads to secondary bacterial pneumonias, particularly with Streptococcus pneumoniae or Staphylococcus aureus. The classic examples are postinfluenza or measles pneumonias. Finally, viral infection of the lower respiratory tract may produce severe disease by triggering a common tissue response to acute lung injuries termed diffuse alveolar damage or acute respiratory distress syndrome. The acute lung injury may progress from an early exudative phase, often with profound noncardiogenic pulmonary edema (especially in HCPS), to a proliferative or organizing phase that produces interstitial inflammation, and a late resolving phase [3].


Clinical Manifestations

The limited host response patterns to virus-induced lung injury means that there is significant overlap in the clinical manifestations of viral pneumonias. The clues to a specific viral etiology are often found in assessing host risk factors and epidemiology on presentation. A summary of the common clinical manifestations for specific viral pneumonias is presented in Table 90.1. Many of the viral infections discussed in this chapter are characterized by a “flu-like illness” prodrome. Symptoms begin with the acute onset of headache, chills, and myalgias. Within a few days, a cough and sore throat develop along with upper respiratory tract infection. The presence or absence of upper respiratory symptoms at this stage may provide one clue to the specific viral etiology. The human-adapted respiratory viruses (human influenza, RSV, adenovirus, non-SARS coronavirus) generally all produce upper respiratory symptoms. Measles is characterized by coryza and conjunctivitis in the prodrome. The absence of upper respiratory symptoms has been reported to be characteristic of infections with several of the zoonotic viruses: SARS coronavirus, hantavirus, and the H5N1 avian influenza virus [4,5,6]. The lower respiratory tract signs and symptoms in viral pneumonias are generally nonspecific and progress to dyspnea, tachypnea, and inspiratory crackles. Sputum production is variable. If the clinical course is biphasic (dyspnea and productive cough after improvement of a flu-like illness), then a secondary bacterial pneumonia should be suspected.

Routine laboratory tests are generally of little help in distinguishing among the viruses that can produce severe respiratory illness. Total leukocyte counts are typically within the normal range or slightly elevated. One exception is measles virus infection, which can produce a marked leukopenia [7]. The most common hematologic finding in the viral pneumonias is a relative lymphopenia. The complete blood count may be useful for diagnosing HCPS. In HCPS caused by Sin Nombre virus (a New World hantavirus), the triad of thrombocytopenia (platelet count less than 150 K per mm3), absolute neutrophilia, and the presence of immunoblasts was a sensitive and specific predictor of HCPS in one study [5]. Electrolyte abnormalities and hepatic transaminase elevation can occur among any of the severe viral pneumonias.









Table 90.1 Presentation and Manifestations of Specific Viral Pneumonias












































































Virus Transmission Epidemiology/settings Pulmonary manifestations Extrapulmonary manifestations Laboratory findings Radiographic findings
Human influenza A and B viruses Airborne droplet transmission (≥10 μm)
Small aerosol (rare)
Fomite contact
Yearly and seasonal (peak season November–April in temperate climates)
Attack rates highest at extremes of age
Predisposing risk factors for pulmonary complications: chronic heart, lung, renal disease; pregnancy
Nosocomial transmission in hospitals and institutional settings
Flu-like illness prodrome (see text) with upper respiratory signs/symptoms
Bronchitis
Croup
Unilateral and bilateral primary viral pneumonia
Secondary bacterial pneumonias (Streptococcus pneumoniae and Staphylococcus aureus)
Secondary bacterial otitis media Myositis (early convalescence) Myocarditis/pericarditis Reye’s syndrome (children) (Nonspecific)
Relative lymphopenia in adults
Leukocytosis in children
(Nonspecific)
Segmental and bilateral alveolar and/or interstitial infiltrates
Consolidation suggests superimposed bacterial process
Diffuse hemorrhagic alveolitis seen in primary influenza pneumonia
Respiratory syncytial virus Airborne droplet transmission (≥ 10 μm) Yearly and seasonal (overlaps with human influenza)
Severe illness at extremes of age: < 2 and > 65 years old
High-risk individuals: children with underlying cardiopulmonary disorders; adults with congestive heart failure or chronic pulmonary disease
Outbreaks in long-term care facilities
Prodrome with upper respiratory signs/symptoms as with human influenza
Bronchiolitis (common in infants)
Pneumonia, unilateral and bilateral
Otitis media (Nonspecific)
Same as influenza
(Nonspecific)
Segmental and multiple areas of interstitial and/or alveolar infiltrates
In children, hyperaeration is reported as common finding
Adenovirus Airborne droplet transmission (≥ 10 μm) Endemic: mild respiratory disease year round
Epidemic: outbreaks in military barracks, hospitals, and institutional settings
Flu-like illness prodrome with upper respiratory signs/symptoms
Progression to severe pneumonia, can be necrotizing
The adenovirus serotypes that produce severe pneumonia are generally not the ones that produce extrapulmonary disease such as diarrhea, epidemic keratoconjunctivitis, or hemorrhagic cystitis (Nonspecific)
Relative lymphopenia
(Nonspecific)
Segmental and multiple areas of interstitial and/or alveolar infiltrates
Focal infiltrates reported as a common presentation
Varicella virus Airborne: aerosol transmission Year-round transmission with peaks in late winter and early spring in temperate climates
Intimate contact with index case of primary varicella infection (chickenpox)
Incubation period is 10–20 d after infection
Risk factors for developing pneumonia: nonimmune adults; smoking; chronic obstructive pulmonary disease; > 100 skin lesions; pregnancy, third trimester
Pneumonia presents 1–6 d after onset of typical rash (chickenpox)
Fever, dyspnea, tachypnea in absence of upper respiratory symptoms
Cutaneous lesions (chickenpox)
CNS involvement (uncommon): acute cerebellar ataxia, encephalitis, CNS vasculitis
(Nonspecific) Nodular or interstitial pneumonitis common
Rubeola virus Fomite and direct contact with respiratory droplets
Airborne: aerosol transmission
Epidemic transmission, localized outbreaks in household and community settings
Outbreaks in doctor’s offices and emergency departments
Infectivity greatest in the 3 d before onset of rash in index case (incubation period 10–14 d)
Risk factors for severe illness: nonimmune adults and children < 5 years old; crowding; pregnancy; HIV infection; malnourished children, developing countries; vitamin A deficiency
Prodrome: cough, coryza, conjunctivitis
Unilateral and bilateral primary viral pneumonia
Secondary bacterial pneumonias (S. pneumoniae, S. aureus, and others)
Typical morbilliform rash (see text)
CNS involvement: acute or chronic encephalitis (typically after respiratory disease)
Leukopenia (Nonspecific)
SARS coronavirus Airborne droplet transmission (≥ 10 μm)
Fomites
Epidemic/outbreak settings
Originated in Asia
Person-to-person transmission after contact with symptomatic, SARS CoV-infected person
No transmission seen since 2003
Fever, myalgias, cough
Upper respiratory signs/symptoms are uncommon
Dyspnea, tachypnea, respiratory decompensation develop around second week of illness
Watery diarrhea in 25% of patients around second week of illness Absolute lymphopenia common Ground-glass opacifications
Unilateral and bilateral focal infiltrates
Pneumomediastinum without preceding intubation or positive pressure ventilation reported as characteristic sign
New World hantaviruses Small-particle aerosols generated from rodent excreta Sporadic, clustered cases in Americas
Exposure to rodents, their droppings and urine, especially in closed spaces
In general, no person-to-person transmission (except possibly with Andes virus)
Febrile/flu-like prodrome usually without any upper respiratory signs/symptoms
Rapid progression to noncardiogenic pulmonary edema/ARDS with hypotension
Renal dysfunction with proteinuria and microscopic hematuria Thrombocytopenia (early and nearly all cases)
Absolute neutrophilia
Relative lymphopenia with immunoblasts on peripheral smear
Elevated hepatic transaminases (nearly all cases)
Bilateral noncardiogenic pulmonary edema/ARDS
Avian influenza A virus H5N1 Presumed droplet transmission and/or direct contact from bird to human Sporadic cases in countries with animal influenza A H5N1
Close contact/exposure to live or dead domestic fowl or wild birds or domestic ducks
Few reports of limited personto-person transmission by intimate contact only
Flu-like prodrome often without upper respiratory signs/symptoms
Early development of primary viral pneumonia
Watery diarrhea
Multiorgan failure
(Nonspecific)
Lymphopenia
Mild-to-moderate thrombocytopenia
Elevated hepatic transaminases
(Nonspecific)
Unilateral and bilateral infiltrates
Multifocal consolidations ARDS
ARDS, acute respiratory distress syndrome; CNS, central nervous system; HIV, human immunodeficiency virus; SARS, severe acute respiratory syndrome.



The radiographic findings in viral pneumonias are also broad and nonspecific. Radiographic infiltrates can have interstitial, alveolar, or combined patterns. The presence of only a diffuse alveolar pattern might suggest a primary influenza pneumonia with hemorrhagic alveolitis [8] or the capillary leak syndrome of acute respiratory distress syndrome, especially due to HCPS. Peribronchial nodular infiltrates is a pattern often reported with varicella pneumonia [9]. Computed tomography (CT) scans are better at detecting the presence, extent, and complications of respiratory infections than chest radiographs. However, they are no better at defining particular radiographic patterns of specific viral or bacterial causes [9].


Diagnosis

The diagnostic modalities available for viral pneumonias rely on detection of a viral component (nucleic acid or protein), growth of the virus in vitro, or development of a virus-specific antibody response. Definitive serologic evidence of a viral infection requires a rise in virus-specific antibody titers between paired acute illness and convalescent sera. With a few exceptions, serologic assays are therefore not generally helpful for the clinician in the acute setting of a viral pneumonia. This section will focus on diagnostic tests that may assist the clinician faced with a critically ill patient and suspected viral pneumonia.


Human Influenza A and B

Rapid, direct, antigen-detection assays are commercially available for diagnosing human influenza A and B virus infections. These assays rely on detection of the influenza virus nucleoprotein in respiratory secretions, and results can be obtained within 1 hour. Because they are based on the viral nucleoprotein, none of the rapid antigen tests provide information about influenza A hemagglutinin subtypes (e.g., H1, H3). Details regarding the available rapid antigen tests for influenza are provided by the Centers for Disease Control (CDC) (http://www.cdc.gov/flu/professionals/diagnosis/rapidclin.htm). The test specificities for diagnosing an influenza virus infection are generally high (more than 90%), but reported sensitivities are lower (33% to 80%) and may vary for different human influenza A virus subtypes [10,11,12]. In clinical practice, the timing and method of sample collection can greatly affect test sensitivity. Influenza A virus shedding from the upper respiratory tract typically peaks 2 to 3 days after symptom onset [13,14]. The window available to reliably detect viral antigen from upper respiratory tract secretions may extend only 5 to 6 days after symptom onset. Influenza virus nucleoprotein is most abundant in the columnar respiratory epithelium. Posterior nasopharyngeal swabs or aspirates that collect columnar epithelial cells are usually the preferred samples for rapid antigen detection assays [10,15,16], even for mechanically ventilated patients in the intensive care unit (ICU).

Reverse transcriptase polymerase chain reaction (RT-PCR) assays and viral culture are the next most commonly used diagnostic tests for human influenza virus infections. Posterior nasopharyngeal swabs or washes, and samples of lower respiratory tract secretions such as endotracheal aspirates or bronchoalveolar lavages, are acceptable samples. Virus typing and influenza A subtyping can be accomplished with either method. Due to its high sensitivity, specificity, and throughput, RT-PCR assays have generally supplanted virus culture in many clinical microbiology laboratories. Unlike viral culture, the detection of influenza viral RNA by RT-PCR cannot assess the presence of live virus in respiratory secretions.


Respiratory Syncytial Virus

Rapid antigen-detection assays and direct immunofluorescent staining for RSV from respiratory secretions have been the primary diagnostic tests used in children. These tests have > 80% sensitivity and > 90% specificity [17]. RT-PCR assays and respiratory viral culture are the other common diagnostic approaches in pediatric populations. In adults, the RSV rapid antigen assays and viral culture are generally insensitive due to low virus shedding and preexisting anti-RSV antibody in respiratory secretions [18,19]. Direct fluorescent antibody staining in nasopharyngeal specimens was reported to be the only rapid assay at least equivalent to viral culture in adults [17]. A RT-PCR assay on respiratory secretions is the preferred acute illness diagnostic method for RSV infection in adults [20,21].


Adenovirus

PCR of adenovirus DNA or respiratory viral culture from a nasopharyngeal swab or aspirate, sputum, or lower respiratory tract secretions is the diagnostic test of choice for adenoviral pneumonia. Direct adenovirus antigen assays that cover most serotypes, such as immunofluorescent antibody staining, are not as sensitive as PCR assays or viral culture.


Varicella

Varicella pneumonia typically develops within 1 to 6 days after the characteristic rash of chickenpox has appeared [22]. If desired, a specific microbiological diagnosis can be obtained by PCR assay or viral culture from a swab or scraping at the base of an unroofed vesicle. Viral detection in respiratory secretions is generally not required.


Rubeola (Measles)

Pulmonary involvement with measles is generally diagnosed on the basis of history and physical findings. In outbreak settings, pneumonia should be suspected in patients who develop respiratory distress and persistent or recurrent fevers during the course of typical measles. Measles is characterized by malaise and fever, followed rapidly by coryza, conjunctivitis, and cough [23]. Early in illness, the presence of Koplik spots on the buccal mucosa is pathognomonic of measles. The classic morbilliform rash begins 3 to 4 days after onset of illness and starts to fade after another 3 days. Worsening respiratory symptoms as the rash is fading is suspicious for rubeola pneumonia. Laboratory confirmation may be useful, particularly in suspected sporadic cases within a highly immunized population. Viral isolation or rapid detection of measles antigen in nasopharyngeal secretions is difficult and not readily available. A presumptive serologic diagnosis can be made by detection of serum antimeasles virus immunoglobulin M (IgM) or immunoglobulin G (IgG) in unimmunized individuals. Serum antibodies appear 1 to 3 days after onset of the rash [24]. Definitive serologic diagnosis requires paired acute and convalescent sera. In immunocompromised patients with overwhelming pneumonia, the antibody response may be minimal. Viral antigen staining of cells or RT-PCR assays on nasal exudates or urinary sediment may be useful in this setting [23].


Severe Acute Respiratory Syndrome Coronavirus

The most practical diagnostic approach for SARS coronavirus is a RT-PCR assay on nasopharyngeal specimens within
2 weeks after symptom onset [25]. The other primary site where SARS coronavirus RNA can be detected is stool (week 2 onward). Lower respiratory tract secretions harbor a greater viral load than upper respiratory tract secretions early in illness. However, lower respiratory tract aspiration, lavage, or intubation pose serious nosocomial transmission risks and should not be pursued solely for diagnostic purposes. IgM seroconversion does not occur until after the first week of illness and therefore is also of limited diagnostic utility [4]. With resolution of SARS viral transmission in 2003, and the apparent subsequent mutation of the virus [26], any initial positive test for SARS coronavirus must be viewed as a potential false-positive finding.


Hantavirus

There are nearly a dozen New World hantaviruses that have been associated with HCPS. Sin Nombre virus (in the southwestern United States) and Andes virus (in South America) are the two best known HCPS-associated hantaviruses. The diagnosis of HCPS can be made by detection of antihantavirus IgM antibodies in acute illness serum. Nearly all patients with HCPS have detectable IgM in their sera at the onset of pulmonary edema. The currently available IgM capture enzyme-linked immunosorbent assay using a recombinant Sin Nombre virus antigen can be used to diagnose all New World hantavirus infections [27]. RT-PCR assay on blood or lung tissue is a research assay of limited utility and not widely available. Because of low yield and biosafety issues, attempted culture of hantaviruses in clinical microbiology laboratories is not recommended.

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Sep 5, 2016 | Posted by in CRITICAL CARE | Comments Off on Serious Epidemic Viral Pneumonias

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